WHO Case Reporting for COVID-19 Surveillance
0.1.0 - ci-build

WHO Case Reporting for COVID-19 Surveillance - Local Development build (v0.1.0). See the Directory of published versions

Logical Model: WhoCrSurveillanceDataDictionary - Mappings

Mappings for the WhoCrSurveillanceDataDictionary logical model.

Mappings for WHO CR Data Dictionary Spreadsheet 2020.2 ()

WhoCrSurveillanceDataDictionary
WhoCrSurveillanceDataDictionary2020-02-27-data-dictionary-en.xlsx
   reportTODO
      datereport_date
      countryreport_country
      testReasonreport_test_reason, report_test_reason_other
   patientInfoTODO
      caseIdpatinfo_ID
      onsetAgepatinfo_ageonset, patinfo_ageonsetunits
      birthSexpatinfo_sex
      identifiedTODO
         countrypatinfo_idadmin0
         subnationalpatinfo_idadmin1
      residenceTODO
         countrypatinfo_resadmin0
   clinicalStatusTODO
      labTODO
         confirmedDateLab_date1
      patientCourseTODO
         onsetDatepatcourse_dateonset
         asymptomaticpatcourse_asymp
         wasAdmittedpatcourse_admit
         admitDatepatcourse_presHCF
         receivedIcuCarepatcourse_icu
         ventilatedpatcourse_vent
         receivedEcmopatcourse_ecmo
         wasIsolatedpatcourse_iso
         isolatedDatepatcourse_dateiso
      comorbiditiespatcourse_dateiso
         anyComcond_present
         presentComcond_preg, Comcond_partum, Comcond_immuno, Comcond_cardi, Comcond_diabetes, Comcond_liver, Comcond_diabetes, Comcond_renal, Comcond_neuro, Comcond_malig, Comcond_lung, Comcond_other
         pregnantTrimesterComcond_pregt
   exposureTODO
      patientInfoTODO
         hcwTODO
            isHealthcareWorkerpatinfo_occuhcw
            workFacilityTODO
               countrypatinfo_occuhcw_country
               citypatinfo_occuhcw_city
               facilityNamepatinfo_occuhcw_name
      travelTODO
         hasTravelledexpo_travel
         locationTODO
            countryexpo_travel_countryX
            cityexpo_travel_cityX
            locationPeriodexpo_travel_dateX
      visitedHealthcareexpo_visit_healthcare
      contactTODO
         hadContactexpo_contact_case
         contactTODO
            identifierexpo_IDx
            exposureTODO
               periodexpo_case_date_firstX, expo_case_date_lastX
               settingexpo_case_setting_detail
         countryexpo_case_location
   outcomeTODO
      submittedoutcome_submitted
      submissionDateoutcome_submitted_date
      symptomaticoutcome_asymp
      symptomaticDateoutcome_asymp_date
      patientCourseTODO
         wasAdmittedoutcome_patcourse_admit
         admitDateoutcome_patcourse_presHCF
         receivedIcuCareoutcome_patcourse_icu
         ventilatedoutcome_patcourse_vent
         receivedEcmooutcome_patcourse_ecmo
         statusoutcome_patcourse_status_other
         statusDateoutcome_date_of_outcome
      labTODO
         dateoutcome_lab_date
         resultoutcome_lab_result
      contactsTODO
         countoutcome_contacts_followed
         countUnknownoutcome_contacts_followed_unknown

Mappings for Logical Observation Identifiers Names and Codes (http://loinc.org)

WhoCrSurveillanceDataDictionary
WhoCrSurveillanceDataDictionaryTODO
   reportTODO
      date77995-9
      country77983-5
      testReason67098-4
   patientInfoTODO
      caseId94659-0
      onsetAge30525-0
      birthSex76689-9
      identifiedTODO
         country96546-7
         subnational96547-5
      residenceTODO
         country77983-5
   clinicalStatusTODO
      labTODO
         confirmedDateTODO
      patientCourseTODO
         onsetDate65222-2
         asymptomaticTODO
         wasAdmitted77974-4
         admitDate8656-1
         receivedIcuCare95420-6
         ventilated96539-2
         receivedEcmo96540-0
         wasIsolated96548-3
         isolatedDate96549-1
      comorbiditiesTODO
         any75618-9
         presentTODO
         pregnantTrimester32418-6
   exposureTODO
      patientInfoTODO
         hcwTODO
            isHealthcareWorker95418-0
            workFacilityTODO
               country80437-7
               city80431-0
               facilityName76696-4
      travelTODO
         hasTravelled96542-6
         locationTODO
            country94651-7
            city94653-3
            locationPeriod91560-3
      visitedHealthcare96543-4
      contactTODO
         hadContact96544-2
         contactTODO
            identifier94657-4
            exposureTODO
               period96545-9
               setting81267-7
         country77984-3
   outcomeTODO
      submittedTODO
      submissionDate96553-3
      symptomaticTODO
      symptomaticDate65222-2
      patientCourseTODO
         wasAdmitted77974-4
         admitDate8656-1
         receivedIcuCare95420-6
         ventilated96539-2
         receivedEcmo96540-0
         status91541-3
         statusDateTODO
      labTODO
         date96550-9
         result96552-5
      contactsTODO
         count96551-7
         countUnknown96551-7

Mappings for Columbia International eHealth Laboratory (https://openconceptlab.org/orgs/CIEL/sources/CIEL)

WhoCrSurveillanceDataDictionary
WhoCrSurveillanceDataDictionaryTODO
   reportTODO
      dateTODO
      country165847
      testReason164126, 163761
   patientInfoTODO
      caseIdTODO
      onsetAge1732
      birthSex166025
      identifiedTODO
         countryTODO
         subnational165851
      residenceTODO
         country165915
   clinicalStatusTODO
      labTODO
         confirmedDateTODO
      patientCourseTODO
         onsetDateTODO
         asymptomatic5006
         wasAdmitted163403
         admitDate1640
         receivedIcuCare165644
         ventilated165647
         receivedEcmo165643
         wasIsolated165795
         isolatedDate165648
      comorbiditiesTODO
         any162747
         presentTODO
         pregnantTrimester160665
   exposureTODO
      patientInfoTODO
         hcwTODO
            isHealthcareWorker5619
            workFacilityTODO
               country165655
               city165654
               facilityName162724
      travelTODO
         hasTravelled165656
         locationTODO
            country162604
            city165645
            locationPeriod162601, 162602
      visitedHealthcare165833
      contactTODO
         hadContact162633
         contactTODO
            identifierTODO
            exposureTODO
               periodTODO
               settingTODO
         countryTODO
   outcomeTODO
      submittedTODO
      submissionDateTODO
      symptomaticTODO
      symptomaticDateTODO
      patientCourseTODO
         wasAdmittedTODO
         admitDateTODO
         receivedIcuCareTODO
         ventilatedTODO
         receivedEcmoTODO
         status159640
         statusDateTODO
      labTODO
         dateTODO
         resultTODO
      contactsTODO
         countTODO
         countUnknownTODO

Mappings for International Statistical Classification of Diseases and Releated Health Problems 10th Revision (https://icd.who.int/browse10)

WhoCrSurveillanceDataDictionary
WhoCrSurveillanceDataDictionaryTODO
   reportTODO
      dateTODO
      countryTODO
      testReasonTODO
   patientInfoTODO
      caseIdTODO
      onsetAgeTODO
      birthSexTODO
      identifiedTODO
         countryTODO
         subnationalTODO
      residenceTODO
         countryTODO
   clinicalStatusTODO
      labTODO
         confirmedDateTODO
      patientCourseTODO
         onsetDateTODO
         asymptomaticTODO
         wasAdmittedTODO
         admitDateTODO
         receivedIcuCareTODO
         ventilatedTODO
         receivedEcmoTODO
         wasIsolatedTODO
         isolatedDateTODO
      comorbiditiesTODO
         anyTODO
         presentTODO
         pregnantTrimesterTODO
   exposureTODO
      patientInfoTODO
         hcwTODO
            isHealthcareWorkerTODO
            workFacilityTODO
               countryTODO
               cityTODO
               facilityNameTODO
      travelTODO
         hasTravelledTODO
         locationTODO
            countryTODO
            cityTODO
            locationPeriodTODO
      visitedHealthcareTODO
      contactTODO
         hadContactTODO
         contactTODO
            identifierTODO
            exposureTODO
               periodTODO
               settingTODO
         countryTODO
   outcomeTODO
      submittedTODO
      submissionDateTODO
      symptomaticTODO
      symptomaticDateTODO
      patientCourseTODO
         wasAdmittedTODO
         admitDateTODO
         receivedIcuCareTODO
         ventilatedTODO
         receivedEcmoTODO
         statusTODO
         statusDateTODO
      labTODO
         dateTODO
         resultTODO
      contactsTODO
         countTODO
         countUnknownTODO

Mappings for International Statistical Classification of Diseases and Releated Health Problems 11th Revision (https://icd.who.int/browse11)

WhoCrSurveillanceDataDictionary
WhoCrSurveillanceDataDictionaryTODO
   reportTODO
      dateTODO
      countryTODO
      testReasonTODO
   patientInfoTODO
      caseIdTODO
      onsetAgeTODO
      birthSexTODO
      identifiedTODO
         countryTODO
         subnationalTODO
      residenceTODO
         countryTODO
   clinicalStatusTODO
      labTODO
         confirmedDateTODO
      patientCourseTODO
         onsetDateTODO
         asymptomaticTODO
         wasAdmittedTODO
         admitDateTODO
         receivedIcuCareTODO
         ventilatedTODO
         receivedEcmoTODO
         wasIsolatedTODO
         isolatedDateTODO
      comorbiditiesTODO
         anyTODO
         presentTODO
         pregnantTrimesterTODO
   exposureTODO
      patientInfoTODO
         hcwTODO
            isHealthcareWorkerTODO
            workFacilityTODO
               countryTODO
               cityTODO
               facilityNameTODO
      travelTODO
         hasTravelledTODO
         locationTODO
            countryTODO
            cityTODO
            locationPeriodTODO
      visitedHealthcareTODO
      contactTODO
         hadContactTODO
         contactTODO
            identifierTODO
            exposureTODO
               periodTODO
               settingTODO
         countryTODO
   outcomeTODO
      submittedTODO
      submissionDateTODO
      symptomaticTODO
      symptomaticDateTODO
      patientCourseTODO
         wasAdmittedTODO
         admitDateTODO
         receivedIcuCareTODO
         ventilatedTODO
         receivedEcmoTODO
         statusTODO
         statusDateTODO
      labTODO
         dateTODO
         resultTODO
      contactsTODO
         countTODO
         countUnknownTODO

Mappings for RxNorm (http://www.nlm.nih.gov/research/umls/rxnorm)

WhoCrSurveillanceDataDictionary
WhoCrSurveillanceDataDictionaryTODO
   reportTODO
      dateTODO
      countryTODO
      testReasonTODO
   patientInfoTODO
      caseIdTODO
      birthSexTODO
      identifiedTODO
         countryTODO
         subnationalTODO
      residenceTODO
         countryTODO
   clinicalStatusTODO
      labTODO
         confirmedDateTODO
      patientCourseTODO
         onsetDateTODO
         asymptomaticTODO
         wasAdmittedTODO
         admitDateTODO
         receivedIcuCareTODO
         ventilatedTODO
         receivedEcmoTODO
         wasIsolatedTODO
         isolatedDateTODO
      comorbiditiesTODO
         anyTODO
         presentTODO
         pregnantTrimesterTODO
   exposureTODO
      patientInfoTODO
         hcwTODO
            isHealthcareWorkerTODO
            workFacilityTODO
               countryTODO
               cityTODO
               facilityNameTODO
      travelTODO
         hasTravelledTODO
         locationTODO
            countryTODO
            cityTODO
            locationPeriodTODO
      visitedHealthcareTODO
      contactTODO
         hadContactTODO
         contactTODO
            identifierTODO
            exposureTODO
               periodTODO
               settingTODO
         countryTODO
   outcomeTODO
      submittedTODO
      submissionDateTODO
      symptomaticTODO
      symptomaticDateTODO
      patientCourseTODO
         wasAdmittedTODO
         admitDateTODO
         receivedIcuCareTODO
         ventilatedTODO
         receivedEcmoTODO
         statusTODO
         statusDateTODO
      labTODO
         dateTODO
         resultTODO
      contactsTODO
         countTODO
         countUnknownTODO

Mappings for Systematic Nomencature of Medicin (http://snomed.info/sct)

WhoCrSurveillanceDataDictionary
WhoCrSurveillanceDataDictionaryTODO
   reportTODO
      dateTODO
      countryTODO
      testReasonTODO
   patientInfoTODO
      caseIdTODO
      onsetAgeTODO
      birthSexTODO
      identifiedTODO
         countryTODO
         subnationalTODO
      residenceTODO
         countryTODO
   clinicalStatusTODO
      labTODO
         confirmedDateTODO
      patientCourseTODO
         onsetDateTODO
         asymptomaticTODO
         wasAdmittedTODO
         admitDateTODO
         receivedIcuCareTODO
         receivedEcmoTODO
         wasIsolatedTODO
         isolatedDateTODO
      comorbiditiesTODO
         anyTODO
         presentTODO
         pregnantTrimesterTODO
   exposureTODO
      patientInfoTODO
         hcwTODO
            isHealthcareWorkerTODO
            workFacilityTODO
               countryTODO
               cityTODO
               facilityNameTODO
      travelTODO
         hasTravelledTODO
         locationTODO
            countryTODO
            cityTODO
            locationPeriodTODO
      visitedHealthcareTODO
      contactTODO
         hadContactTODO
         contactTODO
            identifierTODO
            exposureTODO
               periodTODO
               settingTODO
         countryTODO
   outcomeTODO
      submitted308552006
      submissionDateTODO
      symptomaticTODO
      symptomaticDateTODO
      patientCourseTODO
         wasAdmittedTODO
         admitDateTODO
         receivedIcuCareTODO
         ventilatedTODO
         receivedEcmoTODO
         statusTODO
         statusDateTODO
      labTODO
         dateTODO
         resultTODO
      contactsTODO
         countTODO
         countUnknownTODO

Mappings for RIM Mapping (http://hl7.org/v3)

WhoCrSurveillanceDataDictionary
WhoCrSurveillanceDataDictionaryn/a
   idn/a
   extensionn/a