WHO Case Reporting for COVID-19 Surveillance
0.1.0 - ci-build

WHO Case Reporting for COVID-19 Surveillance - Local Development build (v0.1.0). See the Directory of published versions

Logical Model: WhoCrSurveillanceDataDictionary - Detailed Descriptions

Definitions for the WhoCrSurveillanceDataDictionary logical model.

1. WhoCrSurveillanceDataDictionary
Definition

WhoCrSurveillanceDataDictionary

Control0..* This element is affected by the following invariants: ele-1
InvariantsDefined on this element
ele-1: All FHIR elements must have a @value or children (: hasValue() or (children().count() > id.count()))
LOINC CodeTODO
2. WhoCrSurveillanceDataDictionary.id
Definition

Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.

Control0..1
Typestring
3. WhoCrSurveillanceDataDictionary.extension
Definition

May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.

Control0..*
TypeExtension
Alternate Namesextensions, user content
Comments

There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.

InvariantsDefined on this element
ele-1: All FHIR elements must have a @value or children (: hasValue() or (children().count() > id.count()))
ext-1: Must have either extensions or value[x], not both (: extension.exists() != value.exists())
SlicingThis element introduces a set of slices on WhoCrSurveillanceDataDictionary.extension. The slices are unordered and Open, and can be differentiated using the following discriminators:
  • value @ url
4. WhoCrSurveillanceDataDictionary.report
Definition

Attributes of the case report

Control0..1
TypeBackboneElement
LOINC CodeTODO
5. WhoCrSurveillanceDataDictionary.report.date
Definition

Date of reporting

Control0..1
Typedate
LOINC Code77995-9
6. WhoCrSurveillanceDataDictionary.report.country
Definition

Country/territory/national boundary (admin level 0) within which the case currently/usually resides. If transborders or international spread of outbreak

Control0..1
BindingThe codes SHALL be taken from Iso3166-1-2; other codes may be used where these codes are not suitable
TypeCodeableConcept
LOINC Code77983-5
7. WhoCrSurveillanceDataDictionary.report.testReason
Definition

Why the case was tested for COVID-19

Control0..1
BindingThe codes SHALL be taken from Reason for Covid-19 Testing; other codes may be used where these codes are not suitable
TypeCodeableConcept
LOINC Code67098-4
8. WhoCrSurveillanceDataDictionary.patientInfo
Definition

Case patient demographics

Control0..1
TypeBackboneElement
LOINC CodeTODO
9. WhoCrSurveillanceDataDictionary.patientInfo.caseId
Definition

Unique case identification number (used in country)

Control0..1
TypeIdentifier
LOINC Code94659-0
10. WhoCrSurveillanceDataDictionary.patientInfo.onsetAge
Definition

Age on the date of illness onset

Control0..1
TypeAge
LOINC Code30525-0
11. WhoCrSurveillanceDataDictionary.patientInfo.birthSex
Definition

Biological sex. That is the biological differential characteristics (chromosomes, hormonal profiles, internal and external sex organs) that best describes the case.

Control0..1
BindingThe codes SHALL be taken from Patient Sex at birth
TypeCoding
LOINC Code76689-9
12. WhoCrSurveillanceDataDictionary.patientInfo.identified
Definition

Details of the diagnosis of the case

Control0..1
TypeBackboneElement
LOINC CodeTODO
13. WhoCrSurveillanceDataDictionary.patientInfo.identified.country
Definition

Country (administrative level 0) where the case was diagnosed.

Control0..1
BindingThe codes SHALL be taken from Iso3166-1-2; other codes may be used where these codes are not suitable
TypeCodeableConcept
LOINC Code96546-7
14. WhoCrSurveillanceDataDictionary.patientInfo.identified.subnational
Definition

First sub-national boundary (e.g. province, state, territory, prefecture, region, etc.) (administrative level 1) where the case was diagnosed.

Control0..1
BindingThe codes SHALL be taken from List of Administrative Level 1 Names (Province/State/Canton); other codes may be used where these codes are not suitable
TypeCodeableConcept
LOINC Code96547-5
15. WhoCrSurveillanceDataDictionary.patientInfo.residence
Definition

Details of the residence of the case

Control0..1
TypeBackboneElement
LOINC CodeTODO
16. WhoCrSurveillanceDataDictionary.patientInfo.residence.country
Definition

Country (administrative level 0) within which the case's currently/usually resides.

Control0..1
BindingThe codes SHALL be taken from Iso3166-1-2; other codes may be used where these codes are not suitable
TypeCodeableConcept
LOINC Code77983-5
17. WhoCrSurveillanceDataDictionary.clinicalStatus
Definition

Clinical status of the case on admission

Control0..1
TypeBackboneElement
LOINC CodeTODO
18. WhoCrSurveillanceDataDictionary.clinicalStatus.lab
Definition

Details of case lab testing

Control0..1
TypeBackboneElement
LOINC CodeTODO
19. WhoCrSurveillanceDataDictionary.clinicalStatus.lab.confirmedDate
Definition

Date of first laboratory confirmation

Control0..1
Typedate
LOINC CodeTODO
20. WhoCrSurveillanceDataDictionary.clinicalStatus.patientCourse
Definition

Details of the course of treatment of the case

Control0..1
TypeBackboneElement
LOINC CodeTODO
21. WhoCrSurveillanceDataDictionary.clinicalStatus.patientCourse.onsetDate
Definition

Date of first appearance of the signs or symptoms of the illness/disease.

Control0..1
Typedate
LOINC Code65222-2
22. WhoCrSurveillanceDataDictionary.clinicalStatus.patientCourse.asymptomatic
Definition

Is the case asymptomatic?

Control0..1
BindingThe codes SHALL be taken from Yes/No/Unknown
TypeCoding
LOINC CodeTODO
23. WhoCrSurveillanceDataDictionary.clinicalStatus.patientCourse.wasAdmitted
Definition

Was the case hospitalized, admitted to a hospital or other health facility as an inpatient?

Control0..1
BindingThe codes SHALL be taken from Yes/No/Unknown
TypeCoding
LOINC Code77974-4
24. WhoCrSurveillanceDataDictionary.clinicalStatus.patientCourse.admitDate
Definition

Date the case was first admitted to any health facility.

Control0..1
Typedate
LOINC Code8656-1
25. WhoCrSurveillanceDataDictionary.clinicalStatus.patientCourse.receivedIcuCare
Definition

Did the patient receive care in an intensive care unit (ICU)?

Control0..1
BindingThe codes SHALL be taken from Yes/No/Unknown
TypeCoding
LOINC Code95420-6
26. WhoCrSurveillanceDataDictionary.clinicalStatus.patientCourse.ventilated
Definition

Was the patient ever ventilated for this episode at time of reporting?

Control0..1
BindingThe codes SHALL be taken from Yes/No/Unknown
TypeCoding
LOINC Code96539-2
27. WhoCrSurveillanceDataDictionary.clinicalStatus.patientCourse.receivedEcmo
Definition

Did the patient receive extracorporeal membrane oxygenation (ECMO)?

Control0..1
BindingThe codes SHALL be taken from Yes/No/Unknown
TypeCoding
LOINC Code96540-0
28. WhoCrSurveillanceDataDictionary.clinicalStatus.patientCourse.wasIsolated
Definition

Was the case isolated with proper IPC controls implemented?

Control0..1
BindingThe codes SHALL be taken from Yes/No/Unknown
TypeCoding
LOINC Code96548-3
29. WhoCrSurveillanceDataDictionary.clinicalStatus.patientCourse.isolatedDate
Definition

What date was the case isolated?

Control0..1
Typedate
LOINC Code96549-1
30. WhoCrSurveillanceDataDictionary.clinicalStatus.comorbidities
Definition

Conditions and co-morbidities of the case

Control0..1
TypeBackboneElement
LOINC CodeTODO
31. WhoCrSurveillanceDataDictionary.clinicalStatus.comorbidities.any
Definition

Does the patient have any underlying conditions?

Control0..1
BindingThe codes SHALL be taken from Yes/No/Unknown
TypeCoding
LOINC Code75618-9
32. WhoCrSurveillanceDataDictionary.clinicalStatus.comorbidities.present
Definition

Co-morbidities or conditions is the case known to have. Note that limited inferences may be made about conditions not asserted: the patient may not have the condition; the submitter (or patient) may not know if the patient has the condition; at the time the response was submitted, the condition was not included in the list.

Control1..*
BindingThe codes SHALL be taken from Comorbidity; other codes may be used where these codes are not suitable
TypeCodeableConcept
LOINC CodeTODO
33. WhoCrSurveillanceDataDictionary.clinicalStatus.comorbidities.pregnantTrimester
Definition

Trimester of pregancy

Control0..1
BindingThe codes SHALL be taken from Pregnancy Trimester
TypeCoding
LOINC Code32418-6
34. WhoCrSurveillanceDataDictionary.exposure
Definition

Potential exposure

Control0..1
TypeBackboneElement
LOINC CodeTODO
35. WhoCrSurveillanceDataDictionary.exposure.patientInfo
Definition

Details of patient related to exposure

Control0..1
TypeBackboneElement
LOINC CodeTODO
36. WhoCrSurveillanceDataDictionary.exposure.patientInfo.hcw
Definition

Exposure via patient healthcare employment details

Control0..1
TypeBackboneElement
LOINC CodeTODO
37. WhoCrSurveillanceDataDictionary.exposure.patientInfo.hcw.isHealthcareWorker
Definition

Is the patient working in a health care setting?

Control0..1
BindingThe codes SHALL be taken from Yes/No/Unknown
TypeCoding
LOINC Code95418-0
38. WhoCrSurveillanceDataDictionary.exposure.patientInfo.hcw.workFacility
Definition

Healthcare worker facility details

Control0..*
TypeBackboneElement
LOINC CodeTODO
39. WhoCrSurveillanceDataDictionary.exposure.patientInfo.hcw.workFacility.country
Definition

If case is a healthcare worker, in which country do they work?

Control0..1
BindingThe codes SHALL be taken from Iso3166-1-2; other codes may be used where these codes are not suitable
TypeCodeableConcept
LOINC Code80437-7
40. WhoCrSurveillanceDataDictionary.exposure.patientInfo.hcw.workFacility.city
Definition

If case is a healthcare worker, in which city do they work?

Control0..1
Typestring
LOINC Code80431-0
41. WhoCrSurveillanceDataDictionary.exposure.patientInfo.hcw.workFacility.facilityName
Definition

If case is a healthcare worker, what is the name of the facility in which they work?

Control0..1
Typestring
LOINC Code76696-4
42. WhoCrSurveillanceDataDictionary.exposure.travel
Definition

Exposure via travel details

Control0..1
TypeBackboneElement
LOINC CodeTODO
43. WhoCrSurveillanceDataDictionary.exposure.travel.hasTravelled
Definition

Has the patient travelled in the 14 days prior to symptom onset?

Control0..1
BindingThe codes SHALL be taken from Yes/No/Unknown
TypeCoding
LOINC Code96542-6
44. WhoCrSurveillanceDataDictionary.exposure.travel.location
Definition

Locations of travel in the 14 days prior to symptom onset

Control0..*
TypeBackboneElement
LOINC CodeTODO
45. WhoCrSurveillanceDataDictionary.exposure.travel.location.country
Definition

Specify country of travel for this location

Control0..1
BindingThe codes SHALL be taken from Iso3166-1-2; other codes may be used where these codes are not suitable
TypeCodeableConcept
LOINC Code94651-7
46. WhoCrSurveillanceDataDictionary.exposure.travel.location.city
Definition

Specify city travelled to for this location

Control0..1
Typestring
LOINC Code94653-3
47. WhoCrSurveillanceDataDictionary.exposure.travel.location.locationPeriod
Definition

Specify dates at this location

Control0..1
TypePeriod
LOINC Code91560-3
48. WhoCrSurveillanceDataDictionary.exposure.visitedHealthcare
Definition

Has the patient visited any health care facilities in the 14 days prior to symptom onset

Control0..1
BindingThe codes SHALL be taken from Yes/No/Unknown
TypeCoding
LOINC Code96543-4
49. WhoCrSurveillanceDataDictionary.exposure.contact
Definition

Patient exposure to confirmed cases

Control0..1
TypeBackboneElement
LOINC CodeTODO
50. WhoCrSurveillanceDataDictionary.exposure.contact.hadContact
Definition

Has the patient had contact with a confirmed case in the 14 days prior to disease onset?

Control0..1
BindingThe codes SHALL be taken from Yes/No/Unknown
TypeCoding
LOINC Code96544-2
51. WhoCrSurveillanceDataDictionary.exposure.contact.contact
Definition

Confirmed case contact

Control0..*
TypeBackboneElement
LOINC CodeTODO
52. WhoCrSurveillanceDataDictionary.exposure.contact.contact.identifier
Definition

Unique identifier of confirmed case with whom the patient had contact

NoteThis is a business identifier, not a resource identifier (see discussion)
Control0..1
TypeIdentifier
LOINC Code94657-4
53. WhoCrSurveillanceDataDictionary.exposure.contact.contact.exposure
Definition

Details of exposure to confirmed case

Control0..*
TypeBackboneElement
LOINC CodeTODO
54. WhoCrSurveillanceDataDictionary.exposure.contact.contact.exposure.period
Definition

Dates of exposure to confirmed case

Control0..1
TypePeriod
LOINC Code96545-9
55. WhoCrSurveillanceDataDictionary.exposure.contact.contact.exposure.setting
Definition

If the patient has had contact with a confirmed case in the 14 days prior to symptom onset, explain contact setting

Control0..1
Typestring
LOINC Code81267-7
56. WhoCrSurveillanceDataDictionary.exposure.contact.country
Definition

Specify the location of possible exposure to a case

Control0..1
BindingThe codes SHALL be taken from Iso3166-1-2; other codes may be used where these codes are not suitable
TypeCodeableConcept
LOINC Code77984-3
57. WhoCrSurveillanceDataDictionary.outcome
Definition

Patient outcome

Control0..1
TypeBackboneElement
LOINC CodeTODO
58. WhoCrSurveillanceDataDictionary.outcome.submitted
Definition

Has the outcome section been submitted?

Control0..1
BindingThe codes SHALL be taken from Report Submitted Yes/No/Partial
TypeCodeableConcept
LOINC CodeTODO
59. WhoCrSurveillanceDataDictionary.outcome.submissionDate
Definition

Date of outcome submission

Control0..1
Typedate
LOINC Code96553-3
60. WhoCrSurveillanceDataDictionary.outcome.symptomatic
Definition

If case was asymptomatic at time of specimen collection resulting in first laboratory confirmation, did the case develop any symptoms or signs at any time prior to discharge or death

Control0..1
BindingThe codes SHALL be taken from Yes/No/Unknown
TypeCoding
LOINC CodeTODO
61. WhoCrSurveillanceDataDictionary.outcome.symptomaticDate
Definition

If case was asymptomatic and developed symptoms, what is the date of onset for symptoms/signs of illness

Control0..1
Typedate
LOINC Code65222-2
62. WhoCrSurveillanceDataDictionary.outcome.patientCourse
Definition

Details of the outcome of the patient course of treatment

Control0..1
TypeBackboneElement
LOINC CodeTODO
63. WhoCrSurveillanceDataDictionary.outcome.patientCourse.wasAdmitted
Definition

Patient was first admitted to hospital (outcome)

Control0..1
BindingThe codes SHALL be taken from Yes/No/Unknown
TypeCoding
LOINC Code77974-4
64. WhoCrSurveillanceDataDictionary.outcome.patientCourse.admitDate
Definition

Date patient was first admitted to hospital (outcome)

Control0..1
Typedate
LOINC Code8656-1
65. WhoCrSurveillanceDataDictionary.outcome.patientCourse.receivedIcuCare
Definition

Did the patient receive care in an intensive care unit (ICU)? (outcome)

Control0..1
BindingThe codes SHALL be taken from Yes/No/Unknown
TypeCoding
LOINC Code95420-6
66. WhoCrSurveillanceDataDictionary.outcome.patientCourse.ventilated
Definition

Was the patient ever ventilated for this episode? (outcome)

Control0..1
BindingThe codes SHALL be taken from Yes/No/Unknown
TypeCoding
LOINC Code96539-2
67. WhoCrSurveillanceDataDictionary.outcome.patientCourse.receivedEcmo
Definition

Did the patient receive extracorporeal membrane oxygenation (ECMO)? (outcome)

Control0..1
BindingThe codes SHALL be taken from Yes/No/Unknown
TypeCoding
LOINC Code96540-0
68. WhoCrSurveillanceDataDictionary.outcome.patientCourse.status
Definition

Patient status (outcome)

Control0..1
BindingThe codes SHALL be taken from Patient Outcome; other codes may be used where these codes are not suitable
TypeCodeableConcept
LOINC Code91541-3
69. WhoCrSurveillanceDataDictionary.outcome.patientCourse.statusDate
Definition

Date of Release from isolation/hospital or Date of Death

Control0..1
Typedate
LOINC CodeTODO
70. WhoCrSurveillanceDataDictionary.outcome.lab
Definition

If released from hospital /isolation, details of last laboratory test

Control0..1
TypeBackboneElement
LOINC CodeTODO
71. WhoCrSurveillanceDataDictionary.outcome.lab.date
Definition

Date of last laboratory test

Control0..1
Typedate
LOINC Code96550-9
72. WhoCrSurveillanceDataDictionary.outcome.lab.result
Definition

Result of last test

Control0..1
BindingThe codes SHALL be taken from Test Result
TypeCoding
LOINC Code96552-5
73. WhoCrSurveillanceDataDictionary.outcome.contacts
Definition

High risk contacts followed from this case

Control0..1
TypeBackboneElement
LOINC CodeTODO
74. WhoCrSurveillanceDataDictionary.outcome.contacts.count
Definition

Total number of high-risk contacts followed for this case

Control0..1
TypeunsignedInt
LOINC Code96551-7
75. WhoCrSurveillanceDataDictionary.outcome.contacts.countUnknown
Definition

Number of high risk contacts followed unknown

Control0..1
BindingThe codes SHALL be taken from Yes/No/Unknown
TypeCoding
LOINC Code96551-7