COVID19 Case Reporting
0.1.0 - CI Build International flag

COVID19 Case Reporting - Local Development build (v0.1.0). See the Directory of published versions

Resource Profile: Covid19Specimen - Mappings

Active as of 2023-04-04

Mappings for the covid19-specimen resource profile.

Mappings for RIM Mapping (http://hl7.org/v3)

Covid19Specimen
SpecimenEntity. Role, or Act, Role[classCode=SPEC]
   textAct.text?
   containedN/A
   extensionN/A
   modifierExtensionN/A
   identifier.id
   identifier (USID).id
      idn/a
      extensionn/a
      useRole.code or implied by context
      typeRole.code or implied by context
         idn/a
         extensionn/a
         codingunion(., ./translation)
            idn/a
            extensionn/a
            system./codeSystem
            version./codeSystemVersion
            code./code
            displayCV.displayName
            userSelectedCD.codingRationale
         text./originalText[mediaType/code="text/plain"]/data
      systemII.root or Role.id.root
      valueII.extension or II.root if system indicates OID or GUID (Or Role.id.extension or root)
      periodRole.effectiveTime or implied by context
      assignerII.assigningAuthorityName but note that this is an improper use by the definition of the field. Also Role.scoper
   accessionIdentifier.participation[typeCode=SBJ].act[classCode=ACSN, moodCode=EVN].id
   statusstatus
   type.code
   subject.scoper or .scoper.playsRole
   receivedTime.participation[typeCode=SBJ].act[code=SPCREC, moodCode=EVN].effectiveTime
   parent.scoper (if parent) .player.scopesRole[classCode=SPEC].player (if child)
   requestoutboundRelationship[typeCode=FLFS].target
   collection.participation[typeCode=SBJ].act[classCode=SPECCOLLECT, moodCode=EVN]
      idn/a
      extensionn/a
      modifierExtensionN/A
      collector.participation[typeCode=PFM].role
      collected[x].effectiveTime
      collected[x] (collectedDateTime).effectiveTime
      quantity.participation[typeCode=SBJ].role[classCode=SPEC].player.quantity
      method.methodCode
      bodySite.targetSiteCode
   processing.participation[typeCode=SBJ].act[code=SPCTRT, moodCode=EVN]
      idn/a
      extensionn/a
      modifierExtensionN/A
      description.text
      procedure.code
      additive.participation[typeCode=CSM].role[classCode=ADTV].code
      time[x].effectiveTime
   container.player.scopingRole[classCode=CONT].scoper
      idn/a
      extensionn/a
      modifierExtensionN/A
      identifier.id
      description.desc
      type.code
      capacity.quantity
      specimenQuantity.playedRole[classCode=CONT].quantity
      additive[x].scopesRole[classCode=ADTV].player
   note.inboundRelationship[typeCode=SUBJ].source[classCode=OBS, moodCode=EVN, code="annotation"].value
      idn/a
      extensionn/a
      author[x]Act.participant[typeCode=AUT].role
      author[x] (authorReference)Act.participant[typeCode=AUT].role
      timeAct.effectiveTime
      textAct.text

Mappings for FiveWs Pattern Mapping (http://hl7.org/fhir/fivews)

Covid19Specimen
Specimen
   identifierFiveWs.identifier
   identifier (USID)FiveWs.identifier
   accessionIdentifierFiveWs.identifier
   statusFiveWs.status
   typeFiveWs.what[x]
   subjectFiveWs.subject[x], FiveWs.subject
   receivedTimeFiveWs.done[x]
   requestFiveWs.why[x]
   collection
      collectorFiveWs.actor
      collected[x]FiveWs.init
      collected[x] (collectedDateTime)FiveWs.init
      durationFiveWs.init

Mappings for HL7 v2 Mapping (http://hl7.org/v2)

Covid19Specimen
Specimen
   identifierSPM-2
   identifier (USID)SPM-2
      useN/A
      typeCX.5
         codingC*E.1-8, C*E.10-22
            systemC*E.3
            versionC*E.7
            codeC*E.1
            displayC*E.2 - but note this is not well followed
            userSelectedSometimes implied by being first
         textC*E.9. But note many systems use C*E.2 for this
      systemCX.4 / EI-2-4
      valueCX.1 / EI.1
      periodCX.7 + CX.8
      assignerCX.4 / (CX.4,CX.9,CX.10)
   accessionIdentifierSPM-30 (v2.7+)
   statusSPM-20
   typeSPM-4 and possibly SPM-5
   receivedTimeSPM-18
   requestORC? OBR-2/3?
   collectionSPM-14
      collectorPRT
      collected[x]SPM-17
      collected[x] (collectedDateTime)SPM-17
      quantitySPM-12
      methodSPM-7
      bodySiteSPM-8 and SPM-9
      fastingStatus[x]OBR-
   processing
      additiveSPM-6
   container
      identifierSAC-3
      typeSPM-27
      capacityone of: SAC 16, SAC17 and SAC 20, or SAC 21 and SAC 20
      specimenQuantitySAC-23 (value) SAC-24 (units
      additive[x]SAC-27
   conditionSPM-24
   noteOBX
      author[x]N/A
      author[x] (authorReference)N/A
      timeN/A
      textN/A